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Public Data Packages

Publicly, available CHONe Data Packages are hosted, maintained and curated within the following digital data repositories, Dryad, figshare, Polar Data CatalogueGenBank, PANGAEA, Ocean Networks Canada (VENUS, NEPTUNE & Arctic mini-observatory), Fisheries and Oceans Canada, etc. Below is a list of publicly available data packages, associated with their published articles. 

  1. Archambault P, Snelgrove PVR, Fisher JAD, Gagnon J-M, Garbary DJ, Harvey M, Kenchington EL, Lesage V, Levesque M, Lovejoy C, Mackas DL, McKindsey CW, Nelson JR, Pepin P, Piché L, Poulin M (2010) Data from: From sea to sea: Canada’s three oceans of biodiversity. figshare: Supplementary Tables
  2. Bradbury IR, Hubert S, Higgins B, Bowman S, Borza T, Paterson IG, Snelgrove PVR, Morris CJ, Gregory RS, Hardie DC, Hutchings JA, Ruzzante DE, Taggart CT, Bentzen P (2013) Data from: Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish. Supporting Information, GenBank  accession no. ss131570222–ss131571915
  3. Bradbury IR, Hubert S, Higgins B, Bowman S, Paterson IG, Snelgrove PVR, Morris CJ, Gregory RS, Hardie DC, Borza T, Bentzen P (2011) Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod, Gadus morhua. GenBank accession no. ss131570222–ss131571915
  4. Bradbury IR, Hubert S, Higgins B, Borza T, Bowman S, Paterson IG, Snelgrove PVR, Morris CJ, Gregory RS, Hardie DC, Hutchings J a, Ruzzante DE, Taggart CT, Bentzen P (2010) Data from: Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature. Supplementary material file from: doi:10.1098/rspb.2010.0985.
  5. Carr CM, Hardy SM, Brown TM, Hebert PDN (2011) Data from: A Tri-Oceanic Perspective: DNA Barcoding Reveals Geographic Structure and Cryptic Diversity in Canadian Polychaetes. GenBank affiliated data summarized here as .csv, .xml, and .fasta file formats 
  6. Carr CM (2012) Polychaete diversity and distribution patterns in Canadian marine Waters. Supplementary material file
  7. Chan K, Bendell LI (2013) Data from: Potential effects of an invasive bivalve, Nuttallia obscurata, on select sediment attributes within the intertidal region of coastal British Columbia. Dryad Digital Repository. doi:10.5061/dryad.1786p
  8. Colbeck GJ, Turgeon J, Sirois P, Dodson JJ (2011) Data from: Historical introgression and the role of selective vs. neutral processes in structuring nuclear genetic variation (AFLP) in a circumpolar marine fish, the capelin (Mallotus villosus). Dryad Digital Repository. doi:10.5061/dryad.8616
  9. Comeau AM, Li WKW, Tremblay J-É, Carmack EC, Lovejoy C (2011) Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum. FigShare: Tables, Dataset, Figures
  10. Chu JWF, Leys SP (2010) Data from: High resolution mapping of community structure in three glass sponge reefs (Porifera, Hexactinellida). Dryad Digital Repository. doi:10.5061/dryad.j5925
  11. Chu JWF, Maldonado M, Yahel G, Leys SP (2011) Data from: Glass sponge reefs as a silicon sink. Dryad Digital Repository. doi:10.5061/dryad.5j5r0
  12. Chu JWF, Leys SP (2012) Data from: The dorid nudibranchs Peltodoris lentiginosa and Archidoris odhneri as predators of glass sponges. Dryad Digital Repository.doi:10.5061/dryad.3tc7s
  13. Daigle RM, Metaxas A (2011) Data from: Vertical distribution of marine invertebrate larvae in response to thermal stratification in the laboratory. Dryad Digital Repository. doi:10.5061/dryad.61f07
  14. Daigle RM, Metaxas A (2012) Data from: Modeling of the larval response of green sea urchins to thermal stratification using a random walk approach. Dryad Digital Repository.doi:10.5061/dryad.82gg4
  15. Daigle RM, Metaxas A, deYoung B (2014) Data from: Bay-scale patterns in the distribution, aggregation and spatial variability of larvae of benthic invertebrates. Dryad Digital Repository. doi:10.5061/dryad.fh505
  16. DaSilva CR, Li WK, Lovejoy C (2013) Data from: Phylogenetic diversity of eukaryotic marine microbial plankton on the Scotian Shelf Northwestern Atlantic Ocean. GenBank affiliated data summarized here as .csv, .xml, and .fasta file formats
  17. Filbee-Dexter K, Scheibling RE (2012) Data from: Hurricane-mediated defoliation of kelp beds and pulsed delivery of kelp detritus to offshore sedimentary habitats. Dryad Digital Repository.doi:10.5061/dryad.2s7mc
  18. Forget NL, Juniper SK (2013) Data from: Free-living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge. Dryad Digital Repository.doi:10.5061/dryad.453f3
  19. Forget NL, Juniper SK (2013) Free-living bacterial communities associated with aggregations of Ridgeia piscesae undergoing different environmental conditions at Main Endeavour Vent field, Juan de Fuca Ridge. NCBI accession no. SRA056333, GenBank accession no. JN662022 to JN662309
  20. Forget NL, Murdock SA, Juniper SK (2010) Bacterial diversity in Fe-rich hydrothermal sediments at two South Tonga Arc submarine volcanoes. GenBank accession no. FJ905616–FJ905765
  21. Juniper SK, Perez M, Forget NL (2014) Data from: Molecular study of bacterial diversity within the trophosome of the vestimentiferan tubeworm Ridgeia piscesae. Dryad Digital Repository.http://dx.doi.org/10.5061/dryad.4gk80
  22. King SD, Cone DK, Mackley MP, Bentzen P (2013) Gyrodactylus laevisoides n. sp. (Monogenea: Gyrodactylidae) infecting northern redbelly dace Phoxinus eos Cope (Cyprinidae) from Nova Scotia, Canada. GenBank accession no. KF263526 and KF263527
  23. Krumhansl KA, Lauzon-Guay J, Scheibling RE (2014) Data from: Modeling effects of climate change and phase shifts on detrital production of a kelp bed. Dryad Digital Repository.doi:10.5061/dryad.np274
  24. Krumhansl KA, Lee JM, Scheibling RE (2011) Data from: Grazing damage and encrustation by an invasive bryozoan reduce the ability of kelps to withstand breakage by waves. Dryad Digital Repository. doi:10.5061/dryad.cg8r0
  25. Krumhansl KA, Scheibling RE (2012) Data from: Detrital subsidy from subtidal kelp beds is altered by the invasive green alga Codium fragile ssp. fragile. Dryad Digital Repository.doi:10.5061/dryad.4b2t6
  26. Krumhansl KA, Scheibling RE (2011) Data from: Detrital production in Nova Scotian kelp beds: patterns and processes. Dryad Digital Repository. doi:10.5061/dryad.s3031
  27. Krumhansl KA, Scheibling RE (2011) Data from: Spatial and temporal variation in grazing damage by the gastropod Lacuna vincta in Nova Scotian kelp beds. Dryad Digital Repository.doi:10.5061/dryad.ms6c2
  28. Lacharité M, Metaxas A (2013) Data from: Early life history of deep-water gorgonian corals may limit their abundance. Dryad Digital Repository. doi:10.5061/dryad.30kt0
  29. Layton KKS, Martel AL, Hebert PD (2014) Data from: Patterns of DNA barcode variation in canadian marine molluscs. BOLD: DS-COIMOL, GenBank
  30. Link H, Archambault P, Tamelander T et al. (2011) Data from: Spring-to-summer changes and regional variability of benthic processes in the western Canadian Arctic. PANGAEA Data Publisher for Earth & Environmental Science. doi: 10.1594/PANGAEA.817858
  31. Link H, Piepenburg DArchambault P (2013) Data from: Are Hotspots Always Hotspots? The Relationship between Diversity, Resource and Ecosystem Functions in the Arctic. PLoS One 8:e74077 Figshare: Supplementary tables
  32. Lloyd MJ, Metaxas A, deYoung B (2012) Data from: Physical and biological factors affect the vertical distribution of larvae of benthic gastropods in a shallow embayment. Dryad Digital Repository. doi:10.5061/dryad.19342
  33. Lloyd MJ, Metaxas A, deYoung B (2012) Data from: Patterns in vertical distribution and their potential effects on transport of larval benthic invertebrates in a shallow embayment. Dryad Digital Repository. doi:10.5061/dryad.9js2m
  34. Luddington IA, Kaczmarska I, Lovejoy C (2012) Data from: Distance and Character-Based Evaluation of the V4 region of the 18s rRNA Gene for the Identification of Diatoms (Bacillariophyceae). Figshare: Dataset 1, Dataset 2
  35. Matabos M, Aguzzi J, Robert K, Costa C, Menesatti P, Company JB, Juniper SK (2011) Data from: Multi-parametric study of behavioural modulation in demersal decapods at the VENUS cabled observatory in Saanich Inlet, British Columbia, Canada. Dryad Digital Repository.http://dx.doi.org/10.5061/dryad.db2gd
  36. Matabos M, Aguzzi J, Robert K, Costa C, Menesatti P, Company JB, Juniper SK (2011) Data from: Multi-parametric study of behavioural modulation in demersal decapods at the VENUS cabled observatory in Saanich Inlet, British Columbia, Canada. VENUS.
  37. Matabos M, Tunnicliffe V, Juniper SK, Dean C (2012) Data from: A year in hypoxia: epibenthic community responses to severe oxygen deficit at a subsea observatory in a coastal inlet. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2s75n
  38. Matabos M, Tunnicliffe V, Juniper SK, Dean C (2012) Data from: A Year in Hypoxia: Epibenthic Community Responses to Severe Oxygen Deficit at a Subsea Observatory in a Coastal Inlet. VENUS
  39. Neves BM, Du Preez C, Edinger E (2014) Data from: Mapping coral and sponge habitats on a shelf-depth environment using multibeam sonar and ROV video observations: Learmonth Bank, northern British Columbia, Canada. Dryad Digital Repository. doi:10.5061/dryad.bh051
  40. O'Brien JM, Krumhansl KA, Scheibling RE (2013) Data from: Invasive bryozoan alters interaction between a native grazer and its algal food. Dryad Digital Repository.doi:10.5061/dryad.5q83s
  41. Perrin G, Dibacco C, Plourde S, Winkler G (2012) Data from: Assessing stable isotope dynamics of diapausing Calanus finmarchicus and C. hyperboreus during the overwintering period: a laboratory experiment. Dryad Digital Repository. doi:10.5061/dryad.vb5pj
  42. Perrin G, Plourde S, DiBacco C, Winkler G, Sirois P (2014) Data from: Tracing the origins of Calanus sp. in the Saguenay‑St. Lawrence Marine Park (Québec, Canada) using δ13C as a marker. Dryad Digital Repository. doi:10.5061/dryad.m2m1b
  43. Piot A, Nozais C, Archambault P (2013) Data from: Meiofauna affect the macrobenthic biodiversity-ecosystem functioning relationship. Dryad Digital Repository.doi:10.5061/dryad.dd956
  44. Radulovici, A (2012) Data from: A Tale of Two Biodiversity Levels Inferred from DNA Barcoding of Selected North Atlantic Crustaceans. BOLD: WWGSL, GenBank accession no. FJ581463- FJ581922
  45. Shapiera M, Gregory RS, Morris CJ, Pennell CJ, Snelgrove PVR (2014) Data from: Season and site fidelity determine home range of dispersing and resident juvenile Greenland cod (Gadus ogac) in a Newfoundland fjord Dryad Digital Repository.doi:10.5061/dryad.2f2b3
  46. StGermain, Candice; Tunnicliffe, Verena (2014): Vent tubeworm condition metadata: A Canadian Healthy Oceans Network, Population Connectivity project, PC-11. figsharehttp://dx.doi.org/10.6084/m9.figshare.1032775
  47. StGermain C, Tunnicliffe V (2014) Ridgeia piscesae tube and body condition: A Canadian Healthy Oceans Network, Population Connectivity project, PC-11. figsharehttp://dx.doi.org/10.6084/m9.figshare.972970
  48. StGermain C, Tunnicliffe V (2014) Ridgeia piscesae tubeworm lipid and gonad data: A Canadian Healthy Oceans Network, Population Connectivity project, PC-11. figsharehttp://dx.doi.org/10.6084/m9.figshare.972971
  49. Thaler M, Lovejoy C (2012) Data from: Distribution and diversity of a protist predator Cryothecomonas (Cercozoa) in Arctic marine waters. GenBank accession no. JN048118–JN048125 and JN390437
  50. Thaler M, Lovejoy C (2012) Data from: Distribution and diversity of a protist predator Cryothecomonas (Cercozoa) in Arctic marine waters. Polar Data Catalogue, CCIN Reference No. 10799,  
  51. Wei C-L, Rowe GT, Haedrich RL, Boland GS (2012) Data from: Long-term observations of epibenthic fish zonation in the deep northern Gulf of Mexico. PLoS One 7:e46707 . Figshare: Supplementary Tables

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